Package: JOPS 0.1.19

JOPS: Practical Smoothing with P-Splines

Functions and data to reproduce all plots in the book "Practical Smoothing. The Joys of P-splines" by Paul H.C. Eilers and Brian D. Marx (2021, ISBN:978-1108482950).

Authors:Paul Eilers [aut, cre], Brian Marx [aut], Bin Li [aut], Jutta Gampe [aut], Maria Xose Rodriguez-Alvarez [aut]

JOPS_0.1.19.tar.gz
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JOPS.pdf |JOPS.html✨
JOPS/json (API)

# Install 'JOPS' in R:
install.packages('JOPS', repos = c('https://pauleilers.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • CGHsim - Simulation of CGH data
  • Complaints - Environmental complaints from the Rijnomond area of The Netherlands
  • Disks - Prices of hard disk drives
  • ECG - A section of an ECG
  • G519C18 - Chromosome G519C18 data
  • Greece_deaths - Deaths in Greece in 1960.
  • Hepatitis - Prevalence of Hepatitis among a sample of Bulgarian males.
  • Mixture - Mixture Data
  • Sugar - Sugar Processing Data
  • Suicide - Suicide Data Set
  • Varstar - Brightness of a variable star.
  • Woodsurf - Profile of a sanded piece of wood.
  • bone_data - Spinal bone relative mineral density
  • indiumoxide - An X-ray diffractogram.
  • ova - Ovarian cancer data
  • rdw - Observations on the widths of red blood cell distributions (RDW).

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.09 score 1 stars 2 packages 203 scripts 233 downloads 39 exports 55 dependencies

Last updated 1 years agofrom:f370e4cad8. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 29 2024
R-4.5-winNOTEOct 29 2024
R-4.5-linuxNOTEOct 29 2024
R-4.4-winOKOct 29 2024
R-4.4-macOKOct 29 2024
R-4.3-winOKOct 29 2024
R-4.3-macOKOct 29 2024

Exports:bbasebinitcbasecdiffclone_basecount2ddev_calcfitamplfitasyhist2dhist2dsminverse_linkJOPS_colorsJOPS_pointJOPS_themeLAPS_denspclmps2D_PartialDerivps2DGLMps2DNormalps2DSignalpsBinomialpsNormalpsNormal_Derivpspline_checkerpspline_fitterpspline2d_checkerpsPoissonpsSignalpsVCSignalrowtenssave_PDFset_panelsset_windowsim_psrsim_vcpsrSpATS.nogenospbasetpower

Dependencies:ashbitopsbootcliclustercolorspacedata.tabledotCall64fansifarverfdsfieldsFNNggplot2gluegtablehdrcdeisobandkernlabKernSmoothkslabelinglatticelifecyclelocfitmagrittrmapsMASSMatrixmclustmgcvmulticoolmunsellmvtnormnlmepcaPPpillarpkgconfigpracmaR6rainbowRColorBrewerRcppRCurlrlangrpartscalesSemiParspamSpATStibbleutf8vctrsviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Compute a B-spline basis matrixbbase
Translated number vector to bin index.binit
Spinal bone relative mineral densitybone_data
Compute a circular B-spline basis matrixcbase
Compute a second order circular differencing matrixcdiff
Simulation of CGH dataCGHsim
Clone a B-spline basis for new xclone_base
Environmental complaints from the Rijnomond area of The NetherlandsComplaints
Create a matrix of counts.count2d
Deviance calculation for GLM P-spline fitting.dev_calc
Prices of hard disk drivesDisks
A section of an ECG (electrocardiogram)ECG
Fit amplitude coeffcients in the bundle model for expectilesfitampl
Fit asymmetry parameters in the expectile bundle modelfitasy
Chromosome G519C18 dataG519C18
Deaths in Greece in 1960.Greece_deaths
Prevalence of Hepatitis among a sample of Bulgarian males.Hepatitis
Compute a 2D histogramhist2d
Smooth a 2D histogramhist2dsm
An X-ray diffractogram.indiumoxide
Inverse link function, used for GLM fitting.inverse_link
Joys of P-SplinesJOPS-package JOPS
Custom color ramp.JOPS_colors
Themeing functions used to unify ggplot featuresJOPS_point
Custom theme for ggplotJOPS_theme
Bayesian density estimationLAPS_dens
Mixture DataMixture
Ovarian cancer dataova
Fit a composite link modelpclm
Plotting function for 'ps2DGLM'plot.ps2dglm
Plotting function for 'ps2DNormal'plot.ps2dnormal
Plotting function for 'ps2DSignal'plot.ps2dsignal
Plotting function for 'psNormal', 'psPoisson', 'psBinomial'plot.pspfit
Plotting function for 'psSignal'plot.pssignal
Plotting function for 'psVCSignal'plot.psvcsignal
Plotting function for 'sim_psr'plot.simpsr
Plotting function for 'sim_vcpsr'plot.simvcpsr
Predict function for 'ps2DGLM'predict.ps2dglm
Predict function for 'ps2DNormal'predict.ps2dnormal
Predict function for 'ps2DSignal'predict.ps2dsignal
Predict function for 'psNormal', 'psBinomial', 'psPoisson'predict.pspfit
Predict function for 'psSignal'predict.pssignal
Predict function for 'psVCSignal'predict.psvcsignal
Predict function for 'sim_psr'predict.simpsr
Predict function for 'sim_vcpsr'predict.simvcpsr
Partial derivative two-dimensional smoothing scattered (normal) data using P-splines.ps2D_PartialDeriv
Two-dimensional smoothing of scattered normal or non-normal (GLM) responses using tensor product P-splines.ps2DGLM
Two-dimensional smoothing scattered (normal) data using P-splines.ps2DNormal
Two-dimensional penalized signal regression using P-splines.ps2DSignal
Smoothing scattered binomial data using P-splines.psBinomial
Smoothing scattered (normal) data using P-splines.psNormal
Derivative for a P-spline fit of scattered (normal) data.psNormal_Deriv
P-spline checking algorithm for the GLM.pspline_checker
P-spline fitting algorithm for the GLM.pspline_fitter
P-spline 2D tensor product checking algorithm for the GLM.pspline2d_checker
Smoothing scattered Poisson data using P-splines.psPoisson
Smooth signal (multivariate calibration) regression using P-splines.psSignal
Varying-coefficient penalized signal regression using P-splines.psVCSignal
Observations on the widths of red blood cell distributions (RDW).rdw
Compute the row tensor product of two matricesrowtens
Save a plot as a PDF file.save_PDF
Prepare graphics layout for multiple panelsset_panels
Open a graphics window.set_window
Single-Index signal regression using P-splinessim_psr
Varying-coefficient single-index signal regression using tensor P-splines.sim_vcpsr
Two-dimensional P-spline smoothingSpATS.nogeno
Compute a sparse B-spline basis on evenly spaced knotsspbase
Sugar Processing DataSugar
Suicide Data SetSuicide
Compute a truncated power function.tpower
Brightness of a variable star.Varstar
Profile of a sanded piece of wood.Woodsurf